Activity report 2013_2014

Activity report 2012_2013

Co-ordinator / Fachgruppenleiter: Assoc. Prof. Dr. Alexander KISCHNER
Deputies / Stellvertreter: Dr. Georg Kasimir; Dr. Andreas FARNLEITNER

At present members from 8 Danubian countries join the expert group "Microbiology and Hygiene" (EG-MH). All scientists and experts working in this field are kindly invited to join our group.


Microbial communities represent a fundamental part in aquatic ecosystems and are of great importance for the flux of matter and energy. Heterotrophic bacteria in particular play a decisive role in the metabolisation process of organic matter in river ecosystems which may be derived from allochthonous (primary production) as well as from autochthonous sources (e.g. surface run-off). Their contribution to self-purification, to saprobic processes as well as to the ecological integrity of rivers is of great interest within the scope of water quality assessment. Thus future effort should be taken in order to better understand interactions within microbial communities, such as algae, bacteria, protozoa and viruses, and their vital impacts to higher trophic levels as well as to the abiotic environment. In addition, besides studying microbial communities which are considered crucial for the considered aquatic ecosystems, some particular microbes can be used as excellent bio-indicators for specific pollution events. For example, microbial fecal indicators - as outlined below - have been used successfully for more than one century.

Bacterial indicators like total coliforms, fecal coliforms (thermotolerant coliforms), E. coli, fecal streptococci (enterococci) and heterotrophic plate count (HPC) are widely applied for the assessment of the degree of the pollution of river systems from external sources. They indicate anthropogenic impacts such as fecal pollution or the availability of easily degradable organic material. For examples, E. coli and fecal coliform bacteria are currently one of the best indicators for the assessment of fecal pollution (ISO 9308-1, 1990). Fecal indicators are specifically excreted by humans and warm-blooded animals and survive relative long times in the aquatic environment River systems mainly receive these indicators from raw and treated sewage and by diffuse impacts from farm and pasture land (agriculture). The occurrence of fecal indicators indicate also the potential precence of pathogenic organisms (fecal associated pathogenic bacteria, viruses and parasites). Fecal indicators may also be considered as highly sensitive indicators for the status of anthropogenic influence in aquatic systems. The concentrations of HPC correspond to pollution by organic matter.

For monitoring of river water quality intended for the abstraction of drinking water, irrigation and bathing the examination of microbiological standard parameters (e.g. fecal indicator bacteria) is obligatory (EU-Surface & Drinking Water Directive 75/440/EEC, WHO - Guidelines for the safe use of wastewater and excreta in agriculture and aquaculture, 1989; OEAWV-Irrigation Water Recommendations 1992; EU-Bathing Water Directive 76/160/EEC). Thus detailed knowledge on microbial pollution parameters in aquatic environments is crucial for watershed management activities in order to maintain safe waters for recreational and economic purpose. It is well-known, that - although biological and chemical water quality is acceptable - microbiological parameters might be detected in critical concentrations. Survival times and strategies can vary considerably between indicators and pathogens. Viable but non culturable states are occuring under special conditions. Therefore several research projects are actually developing direct detection methods for pathogens and indicators as well as for the assessment of their activity and/or pathogenicity. The development of new enzymatic or DNA/RNA based methods is making great strides and promising fast and reliable early warning and real time monitoring systems are to be expected soon (see EC-projects mentioned below).

Objectives and goals

Working program



Monitoring of coliforms and E. coli - Development of a new on-line sensor for continuous monitoring of coliforms in river monitoring applications
Workpackage of submitted EC project
Amara Gunatilaka (Verbundplan GmbH ), Andreas Farnleitner & Robert L. Mach (Technische Universität Wien), Systea Srl (Italy)
The most efficient procedure for effective early warning in risk assessment is to use real-time monitoring techniques (Gunatilaka & Dreher, 2003).


Development and validation of a DNA-chip technology for the assessment of the bacteriological quality of bathing and drinking water
This project, financed within the 5th framework programme ("Quality of Live and Management of Living Resources") aims at developing a DNA-chip for the detection of the most important waterborne pathogens and indicator bacteria. A variety of European drinking and bathing waters are sampled in order to validate the chip. A fourth part of the sampling sites are belonging to the Danube catchment area. Actually, the prototypes of the Aqua-Chip are beeing tested in order to validate it. More Information: www.gbf.de/aqua-chip


Monitoring of coliforms and E. coli - Development of a new on-line sensor for continuous monitoring of coliforms in river monitoring applications
The most efficient procedure for effective early warning in risk assessment is to use real-time monitoring techniques (Gunatilaka & Dreher, 2003).
The main objective of development of a new sensor is: (1) real-time determination of coliform (CF) and E.coli in river water for routine monitoring and risk assessment tasks (incorporating it in a mobile platform) (2) reduction of total analytical time (sampling to results) to 30 min. (3) employment of the instrumentation in the Danube - AEWS (Accident Early Warning Systems) (4) extension of the real-time measurements to drinking water and groundwater analysis (bank-filtrates is used as a major source of drinking water in many Danube countries). The advantages offered by this methodology has encouraged us to develop a real-time analytical instrument for CF and E. coli determination in water samples, the success of it would find universal applications, will be exploited during the next phase of the project. The most innovative developments are (1) the short analytical time (bringing down to 30 min. from the usual two days duration) hence the quick detection , (2) real-time application for coliforms, (3) can be also used in laboratory routine analysis (water works, public health labs, water analysis laboratories etc.)

Description of work
Cultivation based detection of microbial indicators is the classical standard in pollution microbiology. The present methods used for the determination of CF and E. coli are time consuming and the total duration of sampling to results varies from 30 - 50 hours. In order to avoid cultivation, efforts were made to generate alternatives which directly detect microbial fecal indicators or related activities. In terms of sensitivity, rapidity and cost, direct determination of specific enzymatic activities in rivers were demonstrated to be excellent candidates for exploitation by real time instrumentation. For this purpose, the application of direct enzymatic detection of CF and E. coli by b-D-galactosidase (GAL) or b-D-glucuronidase (GLU) activity has been demonstrated by various authors (Fiksdal, et al., 1994; George et al 2000; Farnleitner et al., 2001, 2002). The principle is based on the hydrolysis of artificial fluorogenic substrates which are specifically split by the respective enzyme under investigation. By applying these substrates, detection of CF and E. coli can be achieved within 25 to 30 minutes simply by measuring the increase in fluorescence intensity. For rivers and other surface waters it has been demonstrated that there is a significant correlation between log coliforms and log E.coli and the respective enzymatic activity and sensitivity for these habitats is adequate (George et al 2000, Farnleitner, 2001). The 18 month the project is focused on the development and validation of the CF online sensor, the respective E. coli sensor will be implemented in the following modules.


Recent and relevant Publications